Building a conda Environment

A conda enviornment is needed for any post-processing scripts and visualizations of AlphaFold, including running alphapickle and generating sequence coverage plots.

module load anaconda
conda create --prefix /scratch/$USER/alphafold/conda/env python=3.8
source activate /scratch/$USER/alphafold/conda/env
conda install biopython matplotlib pandas
source deactivate

You can call this conda environment inside a SLURM script:

conda run -p "/scratch/$USER/alphafold/conda/env" <command to run in env>

Last updated on Jan 1, 0001