CSV Outputs - alphapickle

AlphaPickle generates CSV files that can be used for downstream analysis and plotting.

PAE.csv

PAE.csv is an n_residue x n_residue matrix that is used for generating PAE heatmaps.

pLDDT.csv

pLDDT.csv is an n_residue-long list which is helpful for generating pLDDT plots.

You can use these files to generate your own custom plots! Try Python, R, or your favorite plotting method.