• Key concepts:
  • Processes, workflows, and parameters
• In general, we are going to:
  • Create processes to execute desired commands
  • Specify parameters to represent workflow settings
  • Define a workflow to execute processes in a specific order
• Key files:
  • main.nf and nextflow.config

Parameters are user-adjustable values that control how a workflow runs. They can specify input files, output locations, software options, reference files, or general pipeline behavior.