Run interactively - good for testing

$ ijob -c 1 -A hpc_training -p interactive –v -t 2:00:00

$ cp  /project/ hpc_training /reproducibility/ snakemake  .

Default execution here is local so everything is running in my ijob session on a compute node. If we wanted to have these processes run non-interactively we would want to make sure we are using the executor flag in our snakemake call: “–executor slurm”

Work in scratch