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Bioinformatics

Using Bioinformatics Tools on Rivanna

This tutorial is an introduction to using several popular bioinformatics tools on Rivanna.

Introduction to Bioinformatics Tools for HPC

An introduction to bioinformatics concepts, sequencing technologies, common analysis tools, and their use on high-performance computing systems.

Working with Genomic Data on HPC

This tutorial introduces tools and resources for performing genome assembly and analysis with HPC.

Reproducibility in Bioinformatics

This tutorial introduces strategies to improve reusability and transparency in bioinformatics research. It presents workflow tools, including Nextflow and Snakemake, that can help to address challenges of reproducibility.

AlphaFold on HPC

This tutorial introduces the basics of GPU computing and demonstrates how to run AlphaFold on the HPC cluster to predict protein structures.

Bioinformatics Data Visualization with Seurat

This tutorial is a step-by-step walkthrough of the Seurat workflow for single-cell RNA-seq analysis.

Introduction to QIIME 2

This tutorial is an introduction to using QIIME 2 for micribiome analysis.